Ready to Optimize?
Unlock the full potential of your DNA with our new state-of-the-art codon optimization app. Designed for both novice and expert geneticists, our tool ensures your sequences are tailored for maximum efficiency.
Welcome to the Beta Codon Optimization Tool. Available now for user testing and feedback. Share Your Feedback Here
Optimize Your DNA with Our Codon Optimization Tool
Unlock the full potential of your DNA with our new state-of-the-art codon optimization app. Designed for both novice and expert geneticists, our tool ensures your sequences are tailored for maximum efficiency.
Start By Uploading or Manually Inputting Sequences File
Please review and re-upload your file or proceed to fix errors through the tool by selecting the green "Start Optimization" button.
Your files must contain
- A list of valid sequences (AA or DNA)
- A name for each sequence
- List of available organisms. We also accept custom codon tables.
Accepted file formats
- Excel Sample File
- CSV Sample File
- FASTA Sample File
Codon Optimization Tool Features
Seamless Integration
Our app seamlessly integrates into your gene design workflow, allowing for real-time codon optimization.
Customizable Parameters
Use your own codon table or select from our list, remove restriction sites, mask segments and isolate flanks.
Advanced Algorithms
Utilize sophisticated algorithms that predict the best codon triplet to reduce the risk of poor protein expression.
User-Friendly Interface
Whether you're at the bench or on the go, our intuitive interface makes codon optimization accessible for everyone.
How It Works: Step by Step
Set up a run to optimize one or hundreds of sequences at a time in just a few minutes, and receive the optimized sequences via email, to order at your own pace!
Input Your Sequences
Simply upload or paste your DNA or protein sequence into our app.
Set Your Preferences
Select your target organism, restriction sites to remove, and any other preferences for optimization.
Optimize
Hit 'Optimize' and let us do the rest, we’ll send your optimized sequences to your email.
Implement & Experiment
Download the optimized sequences and apply it to your experiments with confidence.
Watch step by step how to optimize your sequences
Benefits
Enhanced Expression
Achieve higher protein yields by optimizing codon usage for your expression system.
Speed and Efficiency
Save time with quick optimization, giving you more time for research and development.
Improved Manufacturability Scoring
Reduce the trial and error in your gene expression projects with scientifically-backed optimizations.
FAQ
You can upload your sequences in Fasta format, use our custom form to input your data manually, or simply copy and paste your sequences directly into the app. The app is designed to be flexible and accommodate your preferred method of sequence submission.
Yes, our bulk codon optimization app accepts both DNA and amino acid sequences. You can input your sequences in the format you have, and our app will handle the optimization process accordingly.
While there is no strict limit to the number of sequences you can optimize, performance may vary based on the server load and the complexity of your sequences. If you have a large batch of sequences, the app will process them efficiently, though it may take longer to complete the optimization for numerous or particularly long sequences.
